PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00089.12
Common NameAMTR_s00089p00043950, LOC18429905
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 331aa    MW: 36482 Da    PI: 5.095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00089.12genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12142193155
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  evm_27.model.AmTr_v1.0_scaffold00089.12 142 QRMTHIAVERNRRKQMNEHLRVLRSLMPAS---YVQRGDQASIIGGAIEFVRELE 193
                                              79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.93E-12140197No hitNo description
SuperFamilySSF474591.83E-16141206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-14141196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.94E-4257321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDKDEASYSV MMQGNYSGID NSGAIPEYSM NGGLCTWASL ERLGFGEHAG VDSEMGIEFL  60
KFPVLSERFE HEGVMNSSKT IEEEEIEEEE RETGSHGAIN SSKNSRNESV GVANSGGGEM  120
EQGKGRRKRG RSMKTSEEVE NQRMTHIAVE RNRRKQMNEH LRVLRSLMPA SYVQRGDQAS  180
IIGGAIEFVR ELEQLLQCLE SQKRRRILGG AEGQGGGLVV MGGVEGQQQQ MAVEEEGAER  240
RSCVADIEVR VAGGDAMIKV LSRRRPGQLL RTIAALEEMP LSILHTNITT IDHTVLYSFN  300
VKIIGDSRFT AEDIASSVQQ IFNFIHANTI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142153RMTHIAVERNRR
2202206KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840140.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-104FAMA_ARATH; Transcription factor FAMA
TrEMBLW1P4D20.0W1P4D2_AMBTC; Uncharacterized protein
STRINGPOPTR_0001s32160.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.13e-78bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]